PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 326806
Common NameARALYDRAFT_326806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 190aa    MW: 21168 Da    PI: 10.2111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
326806genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-19555155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
            ++++GVr++  +g+Wv+eIr+p        +r++lg+f+tae Aa+a+++a+  ++g
  326806  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFDTAETAARAYDQAAILMNG 55
            59*****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.73E-33564No hitNo description
SMARTSM003809.2E-39669IPR001471AP2/ERF domain
PROSITE profilePS5103221.865663IPR001471AP2/ERF domain
PfamPF008471.1E-11655IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32663IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-20664IPR016177DNA-binding domain
PRINTSPR003672.3E-10718IPR001471AP2/ERF domain
PRINTSPR003672.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA ILMNGQNAKT  60
NFPIIKSNGS DSLGVNSTLR SPKSLSELLN AKLRKNCKDQ TPYLTCLRLD NDSSHIGVWQ  120
NRAGSKTSPN WVKLVELDDS VNARPGGDIG TNKMKKRNDD VQEDDQMAMQ MIEELLNWTG  180
PASGSIAQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-16469369ATERF1
2gcc_A1e-16469369ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187800.0AK118780.1 Arabidopsis thaliana At5g25390 mRNA for putative AP2 domain containing protein, complete cds, clone: RAFL21-11-L16.
GenBankBT0054610.0BT005461.1 Arabidopsis thaliana clone U51209 putative AP2 domain containing protein (At5g25390) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874256.11e-140hypothetical protein ARALYDRAFT_326806
SwissprotQ3E9581e-130SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLD7M3Y01e-140D7M3Y0_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_60020261e-139(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-132ERF family protein